Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle
Identifieur interne : 000313 ( Main/Exploration ); précédent : 000312; suivant : 000314Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle
Auteurs : Erin D. Scully [États-Unis] ; Kelli Hoover [États-Unis] ; John E. Carlson [États-Unis] ; Ming Tien [États-Unis] ; Scott M. Geib [États-Unis]Source :
- BMC Genomics [ 1471-2164 ] ; 2013.
Abstract
Wood-feeding insects often work in collaboration with microbial symbionts to degrade lignin biopolymers and release glucose and other fermentable sugars from recalcitrant plant cell wall carbohydrates, including cellulose and hemicellulose. Here, we present the midgut transcriptome of larval
Transcripts from putative protein coding regions of over 9,000 insect-derived genes were identified in the
The online version of this article (doi:10.1186/1471-2164-14-850) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/1471-2164-14-850
PubMed: 24304644
PubMed Central: 4046674
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle</title><author><name sortKey="Scully, Erin D" sort="Scully, Erin D" uniqKey="Scully E" first="Erin D" last="Scully">Erin D. Scully</name><affiliation wicri:level="2"><nlm:aff id="Aff13">Intercollege Program in Genetics at the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Intercollege Program in Genetics at the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park</wicri:cityArea></affiliation></author><author><name sortKey="Hoover, Kelli" sort="Hoover, Kelli" uniqKey="Hoover K" first="Kelli" last="Hoover">Kelli Hoover</name><affiliation wicri:level="2"><nlm:aff id="Aff14">Department of Entomology and Center for Chemical Ecology, The Pennsylvania State University, University Park, PA 16802 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Department of Entomology and Center for Chemical Ecology, The Pennsylvania State University, University Park</wicri:cityArea></affiliation></author><author><name sortKey="Carlson, John E" sort="Carlson, John E" uniqKey="Carlson J" first="John E" last="Carlson">John E. Carlson</name><affiliation wicri:level="2"><nlm:aff id="Aff15">The Schatz Center for Tree Molecular Genetics, Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, PA 16802 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>The Schatz Center for Tree Molecular Genetics, Department of Ecosystem Science and Management, The Pennsylvania State University, University Park</wicri:cityArea></affiliation><affiliation><nlm:aff id="Aff16">Department of Bioenergy Science and Technology (World Class University), Chonnam National University, Buk-Gu, Gwangju 500-757 Korea</nlm:aff><wicri:noCountry code="subfield">Gwangju 500-757 Korea</wicri:noCountry></affiliation></author><author><name sortKey="Tien, Ming" sort="Tien, Ming" uniqKey="Tien M" first="Ming" last="Tien">Ming Tien</name><affiliation wicri:level="2"><nlm:aff id="Aff17">Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park</wicri:cityArea></affiliation></author><author><name sortKey="Geib, Scott M" sort="Geib, Scott M" uniqKey="Geib S" first="Scott M" last="Geib">Scott M. Geib</name><affiliation wicri:level="2"><nlm:aff id="Aff18">Tropical Crop and Commodity Protection Research Unit, USDA-ARS Pacific Basin Agricultural Research Center, Hilo, HI 96720 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Hawaï</region></placeName><wicri:cityArea>Tropical Crop and Commodity Protection Research Unit, USDA-ARS Pacific Basin Agricultural Research Center, Hilo</wicri:cityArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24304644</idno><idno type="pmc">4046674</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4046674</idno><idno type="RBID">PMC:4046674</idno><idno type="doi">10.1186/1471-2164-14-850</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000166</idno><idno type="wicri:Area/Pmc/Curation">000166</idno><idno type="wicri:Area/Pmc/Checkpoint">000292</idno><idno type="wicri:Area/Ncbi/Merge">000481</idno><idno type="wicri:Area/Ncbi/Curation">000481</idno><idno type="wicri:Area/Ncbi/Checkpoint">000481</idno><idno type="wicri:Area/Main/Merge">000313</idno><idno type="wicri:Area/Main/Curation">000313</idno><idno type="wicri:Area/Main/Exploration">000313</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle</title><author><name sortKey="Scully, Erin D" sort="Scully, Erin D" uniqKey="Scully E" first="Erin D" last="Scully">Erin D. Scully</name><affiliation wicri:level="2"><nlm:aff id="Aff13">Intercollege Program in Genetics at the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Intercollege Program in Genetics at the Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park</wicri:cityArea></affiliation></author><author><name sortKey="Hoover, Kelli" sort="Hoover, Kelli" uniqKey="Hoover K" first="Kelli" last="Hoover">Kelli Hoover</name><affiliation wicri:level="2"><nlm:aff id="Aff14">Department of Entomology and Center for Chemical Ecology, The Pennsylvania State University, University Park, PA 16802 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Department of Entomology and Center for Chemical Ecology, The Pennsylvania State University, University Park</wicri:cityArea></affiliation></author><author><name sortKey="Carlson, John E" sort="Carlson, John E" uniqKey="Carlson J" first="John E" last="Carlson">John E. Carlson</name><affiliation wicri:level="2"><nlm:aff id="Aff15">The Schatz Center for Tree Molecular Genetics, Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, PA 16802 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>The Schatz Center for Tree Molecular Genetics, Department of Ecosystem Science and Management, The Pennsylvania State University, University Park</wicri:cityArea></affiliation><affiliation><nlm:aff id="Aff16">Department of Bioenergy Science and Technology (World Class University), Chonnam National University, Buk-Gu, Gwangju 500-757 Korea</nlm:aff><wicri:noCountry code="subfield">Gwangju 500-757 Korea</wicri:noCountry></affiliation></author><author><name sortKey="Tien, Ming" sort="Tien, Ming" uniqKey="Tien M" first="Ming" last="Tien">Ming Tien</name><affiliation wicri:level="2"><nlm:aff id="Aff17">Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Pennsylvanie</region></placeName><wicri:cityArea>Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park</wicri:cityArea></affiliation></author><author><name sortKey="Geib, Scott M" sort="Geib, Scott M" uniqKey="Geib S" first="Scott M" last="Geib">Scott M. Geib</name><affiliation wicri:level="2"><nlm:aff id="Aff18">Tropical Crop and Commodity Protection Research Unit, USDA-ARS Pacific Basin Agricultural Research Center, Hilo, HI 96720 USA</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Hawaï</region></placeName><wicri:cityArea>Tropical Crop and Commodity Protection Research Unit, USDA-ARS Pacific Basin Agricultural Research Center, Hilo</wicri:cityArea></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Wood-feeding insects often work in collaboration with microbial symbionts to degrade lignin biopolymers and release glucose and other fermentable sugars from recalcitrant plant cell wall carbohydrates, including cellulose and hemicellulose. Here, we present the midgut transcriptome of larval <italic>Anoplophora glabripennis</italic>, a wood-boring beetle with documented lignin-, cellulose-, and hemicellulose- degrading capabilities, which provides valuable insights into how this insect overcomes challenges associated with feeding in woody tissue.</p></sec><sec><title>Results</title><p>Transcripts from putative protein coding regions of over 9,000 insect-derived genes were identified in the <italic>A. glabripennis</italic> midgut transcriptome using a combination of 454 shotgun and Illumina paired-end reads. The most highly-expressed genes predicted to encode digestive-related enzymes were trypsins, carboxylesterases, β-glucosidases, and cytochrome P450s. Furthermore, 180 unigenes predicted to encode glycoside hydrolases (GHs) were identified and included several GH 5, 45, and 48 cellulases, GH 1 xylanases, and GH 1 β-glucosidases. In addition, transcripts predicted to encode enzymes involved in detoxification were detected, including a substantial number of unigenes classified as cytochrome P450s (CYP6B) and carboxylesterases, which are hypothesized to play pivotal roles in detoxifying host tree defensive chemicals and could make important contributions to <italic>A. glabripennis’</italic> expansive host range. While a large diversity of insect-derived transcripts predicted to encode digestive and detoxification enzymes were detected, few transcripts predicted to encode enzymes required for lignin degradation or synthesis of essential nutrients were identified, suggesting that collaboration with microbial enzymes may be required for survival in woody tissue.</p></sec><sec><title>Conclusions</title><p><italic>A. glabripennis</italic> produces a number of enzymes with putative roles in cell wall digestion, detoxification, and nutrient extraction, which likely contribute to its ability to thrive in a broad range of host trees. This system is quite different from the previously characterized termite fermentation system and provides new opportunities to discover enzymes that could be exploited for cellulosic ethanol biofuel production or the development of novel methods to control wood-boring pests.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/1471-2164-14-850) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Grimaldi, Da" uniqKey="Grimaldi D">DA Grimaldi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schowalter, Td" uniqKey="Schowalter T">TD Schowalter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Friend, Wg" uniqKey="Friend W">WG Friend</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schloss, Pd" 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Scully</name></region><name sortKey="Carlson, John E" sort="Carlson, John E" uniqKey="Carlson J" first="John E" last="Carlson">John E. Carlson</name><name sortKey="Geib, Scott M" sort="Geib, Scott M" uniqKey="Geib S" first="Scott M" last="Geib">Scott M. Geib</name><name sortKey="Hoover, Kelli" sort="Hoover, Kelli" uniqKey="Hoover K" first="Kelli" last="Hoover">Kelli Hoover</name><name sortKey="Tien, Ming" sort="Tien, Ming" uniqKey="Tien M" first="Ming" last="Tien">Ming Tien</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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